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SRX817556: Roquin binds microRNA-146a and Argonaute2 and regulates microRNA homeostasis
1 ILLUMINA (Illumina HiSeq 2000) run: 14.4M spots, 703.5M bases, 429.4Mb downloads

Design: C57BL/6(B6) and Roquinsan/san (sanroque) mice were housed in pathogen free conditions at the Australian Phenomics facility at Australian National University (ANU). Roquin/Roquin-2-/- mice were housed in a pathogen-free barrier facility at the Helmholtz Zentrum, München. For bone marrow chimera reconstitutions, 2x106 cells were injected i.v in to 10-12 weeks old sublethally irradiated (500 cGy, X-rad) C57BL/6 Ly5a recipients and analyzed 12 weeks after reconstitution. The ANU Animal Ethics and Experimentation Committee approved all animal procedures. T cells from spleen and lymph nodes were enriched with an EasySep™ Mouse T Cell Enrichment Kit (Stemcell, Cat# 19751) to >90% purity. RNA was prepared using TRIzol (Life Technologies) and the concentration and integrity of total RNA was verified with an Agilent 2100 Bioanalyser prior to small RNA library construction and deep sequencing by Illumina HiSeq Technology (Beijing Genomics Institute at Shenzhen).
Submitted by: The Australian National University
Study: Mus musculus Transcriptome or Gene expression
show Abstracthide Abstract
Roquin is an RNA-binding protein that prevents autoimmunity and inflammation via repression of bound target mRNAs such as Icos. When Roquin is absent or mutated (Roquinsan), ICOS is overexpressed in T cells. Here we show that Roquin enhances Dicer-mediated processing of pre-miR-146a. Roquin also directly binds Argonaute2, a central component of the RNA-induced silencing complex, and miR-146a, a microRNA that targets Icos mRNA. In the absence of functional Roquin, miR-146a accumulates in T cells. Its accumulation is not due to increased transcription or processing, rather to enhanced stability of mature miR-146a. This is associated with decreased 3' end uridylation of the miRNA. Crystallographic studies reveal that Roquin contains a previously unidentified HEPN domain and identify the structural basis of the 'san' mutation and Roquin's ability to bind multiple RNAs. Roquin emerges as a protein that can bind Ago2, miRNAs and target mRNAs, to control homeostasis of both RNA species.
Sample:
SAMN03268389 • SRS797757 • All experiments • All runs
Organism: Mus musculus
Library:
Name: Wildtype
Instrument: Illumina HiSeq 2000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 14.4M spots, 703.5M bases, 429.4Mb
Run# of Spots# of BasesSizePublished
SRR172442014,356,556703.5M429.4Mb2015-04-10

ID:
1167257

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